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| GO Biological Process | | Annotations: | 16,930 | | Genes: | 20,720 |
Updated Aug 8, 2022
| GO Cellular Component | | Annotations: | 2,122 | | Genes: | 20,932 |
Updated Aug 8, 2022
| GO Molecular Function | | Annotations: | 5,235 | | Genes: | 19,963 |
Updated Aug 8, 2022
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| Human Phenotype | | Annotations: | 10,035 | | Genes: | 5,060 |
Updated Jul 19, 2022
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| Mouse Phenotype | | Annotations: | 11,088 | | Genes: | 12,941 |
Updated Aug 1, 2022
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| Pathways | | Annotations: | 5,006 | | | BioSystems: BIOCYC | 314 | | | BioSystems: KEGG | 406 | | | BioSystems: Pathway Interaction Database | 186 | | | BioSystems: REACTOME | 1,860 | | | GenMAPP | 67 | | | MSigDB C2 BIOCARTA (v7.5.1) | 1,367 | | | PantherDB | 152 | | | Pathway Ontology | 321 | | | SMPDB | 333 | | Genes: | 13,609 |
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| Domains | | Annotations: | 21,882 | | | Gene3D | 861 | | | InterPro | 12,478 | | | PROSITE | 1,698 | | | Pfam | 5,691 | | | ProDom | 177 | | | SMART | 977 | | Genes: | 18,678 |
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| Pubmed | | Annotations: | 1,043,184 | | Genes: | 44,761 |
Updated Jul 19, 2022
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| Interactions | | Annotations: | 19,895 | | Genes: | 19,896 |
Updated Jul 19, 2022
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| Cytoband | | Annotations: | 2,290 | | Genes: | 33,040 |
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| TFBS | | Annotations: | 1,133 | | | MSigDB | 518 | | | TFBS | 615 | | Genes: | 26,918 |
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| miRNA | | Annotations: | 10,743 | | | MSigDB | 313 | | | MicroRNA.org | 2,200 | | | MirDB | 4,632 | | | PITA | 677 | | | TargetScan | 322 | | | miRTarbase | 2,599 | | Genes: | 59,110 |
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| Gene Families | | Annotations: | 940 | | Genes: | 18,084 |
| ToppCell Atlas | | Annotations: | 29,905 | | | A Cellular Census of Human Lungs (Vieira Braga et al) | 249 | | | Adult human kidney single cell transcriptional and chromatin accessibility profiling | 190 | | | Airway Inflammation in Cystic Fibrosis (CF) | 42 | | | Atlas of Lymphangioleiomyomatosis (LAM) | 40 | | | Bronchoalveolar Lavage (BAL) Atlas of COVID-19 Patients (Liao et al.) | 108 | | | Bronchoalveolar Lavage (BAL) Atlas of Severe COVID-19 Patients (Grant et al.) | 83 | | | CD8+ Memory T cells (PBMC) of COVID-19 Patients | 107 | | | COVID-19 Autopsy Atlas (Lung, Liver, Kidney, Heart) | 227 | | | COVID-19 B cell and Plasma cell Atlas in PBMC and BAL | 123 | | | COVID-19 BAL Atlas | 83 | | | COVID-19 Cerebrospinal Fluid-derived (CSF) Leukecytes | 179 | | | COVID-19 Lung Atlas | 222 | | | COVID-19 Lung Autopsy Data (SCP1219) | 116 | | | COVID-19 PBMC Myeloid Cell Atlas | 80 | | | COVID-19 PBMC Neutrophil Atlas | 29 | | | COVID-19 PBMC Platelet Atlas | 42 | | | COVID-19 T Cell Atlas (PBMC) | 54 | | | COVID-19 T cell Atlas (BAL) | 55 | | | COVID-19 cDC Atlas | 75 | | | Cells of the human intestinal tract mapped across space and time | 1,269 | | | Colon Immune Atlas | 206 | | | Colon Immune Atlas from Gut Cell Atlas | 183 | | | Comparison of human cortex and organoids | 94 | | | Cross-tissue immune cell analysis reveals tissue-specific features in humans | 645 | | | Human Adult Brain MTG | 264 | | | Human Blood Atlas | 53 | | | Human Bone Marrow Atlas | 78 | | | Human Bronchial Epithelial Cells (HBEC) | 43 | | | Human Cord Blood Atlas | 81 | | | Human Fetal Lung in Development | 202 | | | Human Hepatoblastoma Atlas | 48 | | | Human Ileal Epithelial cells from Crohn’s Disease | 18 | | | Human Ileal Immune cells from Crohn's Disease | 195 | | | Human Lung Cell Atlas (HLCA) | 1,193 | | | Human Lung Cells in 3 Age Groups (Wang et al.) | 414 | | | Human Metastatic Lung Adenocarcinoma (Nayoung Kim et al) | 526 | | | Human Multiple Cortical Areas SMART-seq | 946 | | | Immune and Hematologic Cells from 24 tissues of the Tabula Sapiens: a multiple organ single cell transcriptomic atlas of humans. | 416 | | | Influenza Atlas | 84 | | | Integrated Single-nucleus and Single-cell RNA-seq of the Adult Human Kidney | 1,467 | | | Integration of 5 COVID-19 PBMC Datasets | 124 | | | Integration of Four Brain Organoid Datasets and One Fetal Brain Dataset | 480 | | | Integration of Lung Superbins | 154 | | | Integration of Multiple Sampling Location of COVID-19 Patients | 1,421 | | | Integration of immune-mediated diseases (COVID-19 + Influenza + Sepsis + Multiple Sclerosis) | 384 | | | Large Scale COVID-19 Single Cell Data (Ren et al.) | 875 | | | LungMAP — Genomic, epigenomic and biophysical cues controlling the emergence of the gas exchange niche in the mouse lung | 296 | | | Mouse Adult Brain Overview (690k cells, 9 regions, 565 cell clusters) | 1,672 | | | Mouse Adult Trachea | 46 | | | Mouse Aging Atlas- Tabula Muris Senis | 4,907 | | | Mouse Aging Atlas- Tabula Muris Senis (Lung and Trachea) | 888 | | | Mouse Bone Marrow Niche (Baccin et al) | 68 | | | Mouse Bone Marrow Niche (Baryawno et al) | 38 | | | Mouse Bone Marrow Niche (Tikhonova et al) | 29 | | | Mouse Trachea Epithelial Cells (MTECs) | 49 | | | Mouse developmental Lung | 102 | | | Mouse_Lung_DevAtlas | 153 | | | Multiple Sclerosis | 62 | | | PBMC Atlas of COVID-19 Patients (Arunachalam et al.) | 155 | | | PBMC Atlas of COVID-19 Patients (Guo et al.) | 64 | | | PBMC Atlas of COVID-19 Patients (Schulte-Schrepping et al.) | 327 | | | PBMC Atlas of COVID-19 and Influenza Patients (Lee et al.) | 235 | | | PBMC Atlas of COVID-19 patients (Wilk et al.) | 87 | | | Pathobiology of Pulmonary Fibrosis (Reyfman et al., 2019) | 275 | | | PretermPrimateLungAtlas | 295 | | | Resident Cell Populations in IPF and COPD | 363 | | | Respiratory Tissues from Nasal Brushing to Parenchyma | 42 | | | Rheumatoid Arthritis and Lupus Nephritis Atlas | 101 | | | SARS-CoV-2 Infected Human Cell Lines | 10 | | | Sepsis Atlas | 201 | | | Shared and distinct transcriptomic cell types across neocortical areas | 293 | | | TCGA OncoMap | 773 | | | The Integrated Human Lung Cell Atlas | 2,345 | | | Tissue Stability Cell Atlas - Lung Cells | 1,359 | | | Tissue Stability Cell Atlas - Oesophagus Cells | 41 | | | Tissue Stability Cell Atlas - Spleen Cells | 63 | | | Transcriptional and Cellular Diversity of the Human Heart | 140 | | | Upper Airway and Bronchi Atlas of COVID-19 Patients | 381 | | | mouse_P3_lung_dropseq (2716 cells) | 69 | | | scRNA-seq of ileum and lung epithelial cells in macaque. | 9 | | Genes: | 45,650 |
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| Coexpression | | Annotations: | 12,951 | | | GeneSigDB | 3,515 | | | MSigDB C2: CGP Curated Gene Sets (v7.5.1) | 3,384 | | | MSigDB C6: Oncogenic Signatures (v7.5.1) | 83 | | | MSigDB C7: Immunologic Signatures (v7.5.1) | 5,219 | | | MSigDB C8: Cell Type Signatures (v7.5.1) | 700 | | | MSigDB H: Hallmark Gene Sets (v7.5.1) | 50 | | Genes: | 26,258 |
| Coexpression Atlas | | Annotations: | 4,968 | | | Body Map | 65 | | | FaceBase_RNAseq | 399 | | | FaceBase_ST1 | 187 | | | Gudmap Mouse MOE430.2 | 1,962 | | | Gudmap Mouse ST 1.0 | 675 | | | Gudmap RNAseq | 180 | | | Human Protein Atlas | 37 | | | Immgen.org, GSE15907 | 510 | | | PCBC | 772 | | | PCBC_AltAnalyze | 181 | | Genes: | 21,235 |
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| Computational Gene Set | | Annotations: | 858 | | | MSigDb: C4 - CGN: Cancer Gene Neighborhood (v7.2) | 427 | | | MSigDb: C4 - CM: Cancer Modules (v7.2) | 431 | | Genes: | 10,012 |
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| Drugs | | Annotations: | 77,146 | | | Broad Institute CMAP Down | 6,100 | | | Broad Institute CMAP Up | 6,100 | | | CTD | 12,437 | | | Drug Bank | 3,803 | | | Stitch | 48,706 | | Genes: | 22,767 |
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| Disease | | Annotations: | 42,637 | | | Clinical Variations | 6,909 | | | DisGeNET BeFree | 17,993 | | | DisGeNET Curated | 11,181 | | | GWAS | 291 | | | OMIM MedGen | 6,263 | | Genes: | 19,383 |
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Updated Aug 2, 2022
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| Build Information |
| ToppGene | 2021-Mar-29 15:59 / #31 / 639dfe36cbad55ba69e8255099537d5c2fcb9483 |
| Settings | 2018-Dec-17 21:32 / #3 / 328e53bf1eecab287d45c98a7262c85e1c7a117e |
| Visualization | 2019-Jan-16 21:42 / #1 / ac0dfc7ee8d9204193d592f1d8d372626eb9621a |
| Utilities | 2020-Dec-15 17:02 / #18 / 299ab5789c3ddec336e791c36cf36252cb11a975 |
| Session | 2019-01-16 21:41 / #1 / f193998539321fb9c76fdd36d75d77fae3f443ef |
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