ToppGene Suite

A one-stop portal for gene list enrichment analysis and candidate gene prioritization
based on functional annotations and protein interactions network

GO Biological Process
Annotations:
9,124
Genes:
18,650
Updated Aug 2, 2010
GO Cellular Component
Annotations:
1,161
Genes:
19,191
Updated Aug 2, 2010
GO Molecular Function
Annotations:
3,595
Genes:
18,834
Updated Aug 2, 2010
Human Phenotype
Annotations:
6,752
Genes:
2,720
Updated Jun 25, 2010
Mouse Phenotype
Annotations:
6,501
Genes:
5,888
Updated Aug 16, 2010
Pathways
Annotations:
2,192
BioCyc
164
Aug 2, 2010 CGAP BioCarta
314
GenMAPP
67
KEGG pathway
202
MSigDB
421
NCI-Nature Curated
177
PantherDB
150
Pathway Ontology
321
Reactome
25
SMPDB
333
SigmaAldrich
2
Signalling Transduction KE
16
Genes:
7,273
Domains
Annotations:
10,223
Gene3D
285
InterPro
4,859
PROSITE
1,351
Pfam
2,774
ProDom
385
SMART
569
Genes:
12,414
Pubmed
Annotations:
367,155
Genes:
26,578
Updated Jul 28, 2010
Interactions
Annotations:
10,485
Genes:
10,485
Updated Aug 16, 2010
Cytoband
Annotations:
283
Genes:
30,383
TFBS
Annotations:
615
Genes:
9,770
miRNA
Annotations:
884
MSigDB
313
PicTar
178
TargetScan
249
miRecords_TarBase
144
Genes:
10,992
Gene Families
Annotations:
151
Genes:
6,098
Coexpression
Annotations:
1,245
Body Map
65
mSigDB
1,180
Genes:
12,960
Computational Gene Set
Annotations:
427
Genes:
4,705
Drugs
Annotations:
16,297
Jul 28, 2010 CTD
5,846
Jun 11, 2010 Drug Bank
2,009
Jul 28, 2010 Stitch
8,442
Genes:
15,986
Disease
Annotations:
3,887
CTD
1,006
GWAS
291
OMIM
2,590
Genes:
4,446
Master Gene Info File
For All Annotations
0
Updated Aug 16, 2010
ToppGene [Hudson Build-439] Tuesday, July 6, 2010 11:11:12 AM EDT node-2