| ToppCell Atlas |
| Annotations: | 32,867 |
| | A Cellular Census of Human Lungs (Vieira Braga et al) | 249 |
| | A spatial multi-omics atlas of the human lung reveals a novel immune cell survival niche | 847 |
| | A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung | 429 |
| | Airway Inflammation in Cystic Fibrosis (CF) | 42 |
| | Atlas of Lymphangioleiomyomatosis (LAM) | 40 |
| | Blood and immune development in human fetal bone marrow | 511 |
| | Bronchoalveolar Lavage (BAL) Atlas of COVID-19 Patients (Liao et al.) | 108 |
| | Bronchoalveolar Lavage (BAL) Atlas of Severe COVID-19 Patients (Grant et al.) | 83 |
| | CD8+ Memory T cells (PBMC) of COVID-19 Patients | 107 |
| | COVID-19 Autopsy Atlas (Lung, Liver, Kidney, Heart) | 227 |
| | COVID-19 B cell and Plasma cell Atlas in PBMC and BAL | 123 |
| | COVID-19 BAL Atlas | 83 |
| | COVID-19 Cerebrospinal Fluid-derived (CSF) Leukecytes | 179 |
| | COVID-19 Lung Atlas | 222 |
| | COVID-19 Lung Autopsy Data (SCP1219) | 116 |
| | COVID-19 PBMC Myeloid Cell Atlas | 80 |
| | COVID-19 PBMC Neutrophil Atlas | 29 |
| | COVID-19 PBMC Platelet Atlas | 42 |
| | COVID-19 T Cell Atlas (PBMC) | 54 |
| | COVID-19 T cell Atlas (BAL) | 55 |
| | COVID-19 cDC Atlas | 75 |
| | Cells of the human intestinal tract mapped across space and time | 1,671 |
| | Colon Immune Atlas | 206 |
| | Colon Immune Atlas from Gut Cell Atlas | 183 |
| | Comparison of human cortex and organoids | 94 |
| | Cross-tissue immune cell analysis reveals tissue-specific features in humans | 610 |
| | Harmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma | 668 |
| | Human Adult Brain MTG | 264 |
| | Human Adult Multiple Cortical Areas SMART-seq | 867 |
| | Human Blood Atlas | 53 |
| | Human Bone Marrow Atlas | 78 |
| | Human Bronchial Epithelial Cells (HBEC) | 43 |
| | Human Cell Ref v1.1 | 241 |
| | Human Cord Blood Atlas | 81 |
| | Human Fetal Lung in Development | 202 |
| | Human Hepatoblastoma Atlas | 48 |
| | Human Ileal Epithelial cells from Crohn’s Disease | 18 |
| | Human Ileal Immune cells from Crohn's Disease | 195 |
| | Human Lung Cell Atlas (HLCA) | 615 |
| | Human Lung Cells in 3 Age Groups (Wang et al.) | 414 |
| | Human Metastatic Lung Adenocarcinoma (Nayoung Kim et al) | 526 |
| | Human embryonic and fetal stage lung cell atlas | 398 |
| | Immune and Hematologic Cells from 24 tissues of the Tabula Sapiens: a multiple organ single cell transcriptomic atlas of humans. | 416 |
| | Influenza Atlas | 84 |
| | Integrated Single-nucleus and Single-cell RNA-seq of the Adult Human Kidney | 1,464 |
| | Integration of 5 COVID-19 PBMC Datasets | 124 |
| | Integration of Four Brain Organoid Datasets and One Fetal Brain Dataset | 480 |
| | Integration of Multiple Sampling Location of COVID-19 Patients | 1,421 |
| | Integration of immune-mediated diseases (COVID-19 + Influenza + Sepsis + Multiple Sclerosis) | 384 |
| | Large Scale COVID-19 Single Cell Data (Ren et al.) | 875 |
| | LungMAP — Genomic, epigenomic and biophysical cues controlling the emergence of the gas exchange niche in the mouse lung | 296 |
| | Mouse Adult Brain Overview (690k cells, 9 regions, 565 cell clusters) | 1,672 |
| | Mouse Adult Trachea | 46 |
| | Mouse Aging Atlas- Tabula Muris Senis | 4,907 |
| | Mouse Aging Atlas- Tabula Muris Senis (Lung and Trachea) | 888 |
| | Mouse Bone Marrow Niche (Baccin et al) | 68 |
| | Mouse Bone Marrow Niche (Baryawno et al) | 38 |
| | Mouse Bone Marrow Niche (Tikhonova et al) | 29 |
| | Mouse Trachea Epithelial Cells (MTECs) | 49 |
| | Mouse_Lung_DevAtlas | 153 |
| | Mouse_Lung_DropSeq_E16-P28 | 982 |
| | Multiple Sclerosis | 62 |
| | PBMC Atlas of COVID-19 Patients (Arunachalam et al.) | 155 |
| | PBMC Atlas of COVID-19 Patients (Guo et al.) | 64 |
| | PBMC Atlas of COVID-19 Patients (Schulte-Schrepping et al.) | 327 |
| | PBMC Atlas of COVID-19 and Influenza Patients (Lee et al.) | 235 |
| | PBMC Atlas of COVID-19 patients (Wilk et al.) | 87 |
| | Pathobiology of Pulmonary Fibrosis (Reyfman et al., 2019) | 275 |
| | PretermPrimateLungAtlas | 748 |
| | Resident Cell Populations in IPF and COPD | 363 |
| | Respiratory Tissues from Nasal Brushing to Parenchyma | 42 |
| | Rheumatoid Arthritis and Lupus Nephritis Atlas | 101 |
| | SARS-CoV-2 Infected Human Cell Lines | 10 |
| | Sepsis Atlas | 201 |
| | Shared and distinct transcriptomic cell types across neocortical areas | 293 |
| | Single-cell RNA-seq reveals the cell-type-specific molecular and genetic associations to lupus | 301 |
| | TCGA OncoMap | 773 |
| | The Integrated Human Lung Cell Atlas | 1,216 |
| | Tissue Stability Cell Atlas - Lung Cells | 1,359 |
| | Tissue Stability Cell Atlas - Oesophagus Cells | 41 |
| | Tissue Stability Cell Atlas - Spleen Cells | 63 |
| | Transcriptional and Cellular Diversity of the Human Heart | 140 |
| | Upper Airway and Bronchi Atlas of COVID-19 Patients | 381 |
| | mouse_P3_lung_dropseq (2716 cells) | 69 |
| | scRNA-seq of ileum and lung epithelial cells in macaque. | 9 |
| Genes: | 44,991 |
