ToppGene Suite

A one-stop portal for gene list enrichment analysis and candidate gene prioritization
based on functional annotations and protein interactions network

GO Biological Process
Annotations:
8,019
Genes:
15,202
Updated Nov 18, 2009
GO Cellular Component
Annotations:
1,085
Genes:
16,904
Updated Nov 18, 2009
GO Molecular Function
Annotations:
3,440
Genes:
16,053
Updated Nov 18, 2009
Human Phenotype
Annotations:
6,775
Genes:
2,533
Updated Sep 10, 2009
Mouse Phenotype
Annotations:
6,332
Genes:
5,659
Updated Nov 18, 2009
Pathways
Annotations:
2,146
BioCyc
164
Aug 25, 2009 CGAP BioCarta
314
GenMAPP
67
Jun 15, 2009 KEGG pathway
202
May 10, 2009 MSigDB
429
NCI-Nature Curated
168
PantherDB
150
Aug 25, 2009 Pathway Ontology
306
Reactome
25
Dec 8, 2009 SMPDB
312
SigmaAldrich
2
Signalling Transduction KE
7
Genes:
7,413
Domains
Annotations:
10,223
Gene3D
285
InterPro
4,859
PROSITE
1,351
Pfam
2,774
ProDom
385
SMART
569
Genes:
12,414
Pubmed
Annotations:
366,978
Genes:
42,204
Updated Jan 27, 2010
Interactions
Annotations:
21,679
BIND
4,362
BioGRID
7,689
HPRD
9,628
Genes:
9,817
Updated Dec 10, 2009
Cytoband
Annotations:
382
Genes:
27,989
TFBS
Annotations:
615
Genes:
9,770
miRNA
Annotations:
740
MSigDB
313
PicTar
178
TargetScan
249
Genes:
11,620
Gene Families
Annotations:
151
Genes:
6,098
Coexpression
Annotations:
1,245
Body Map
65
mSigDB
1,180
Genes:
12,960
Computational Gene Set
Annotations:
427
Genes:
4,705
Drugs
Annotations:
13,141
Aug 28, 2009 CTD
4,977
Aug 25, 2009 Drug Bank
2,009
Aug 25, 2009 Stitch
6,155
Genes:
14,837
Disease
Annotations:
3,800
Aug 28, 2009 CTD
1,006
GWAS
291
OMIM
2,503
Genes:
4,394
Master Gene Info File
For All Annotations
0
Updated Dec 10, 2009
ToppGene [Hudson Build-395] Wednesday, February 24, 2010 1:11:10 PM EST